VENUE
1400 16th St,
San Francisco, CA 94103
DATE AND TIME
Friday June 7th: 17.00 - 23.00
Saturday June 8th: 9am - 23.00
Sunday June 9th: 9am -18.00
AGENDA
Friday Night
17.00: Doors Open. Check-in, Eat, Make new friends.
18.30: Program Starts: OPENING TALKS.
18.30 - Kickoff: Ben Busby
18.35 - Invitae Welcome: Alex Furman
18.40 - Invitae Data Overview: Ed Esplin
18.50 - Patient Introduction: John M.
19.00 - Data Overview and Tools: Ryan Leung
19.10 - MedGenome: Hiranjith GH
19.20 - QIAGEN: Jennifer Poitras
19.30 - DNAnexus: Jason Chin
19.40 - SVAI Introduction: Annabelle Tang
19.45 - Final Welcome: Pete Kane
19.40 - START
19.35: Team Formation, Finish Setup, Start Working.
23.00: Doors Close.
Saturday
9.00: Doors Open, Breakfast
11:00 AM Qiagen QCI Expert Corner: Jennifer Poitras
12.00: Lunch.
15.00: Work.
17.30: Dinner.
23.00: Doors Close.
Sunday
9.00: Doors Open, Breakfast
10.00: Work.
12.00: Lunch.
13.00: Work.
14.15: Submissions Due for end of event presentations.
14.30: Presentations & Evaluation.
14.40: MedGenome’s Results: Ankita Das
16.30: Happy Hour, Celebrate!
18.00: End. Until Next Time :(
FEATURED PARTICIPANTS
Here’s some of the wonderful people joining to work on this case!
Brett Teng Gao, Computational Biologist at Memorial Sloan Kettering
Hrushikesh Deshmukh, Sr Program Analyst
Deepika Gunasekaran, Graduate Student at University of California, Merced
Dima Lituiev, Postdoc at UCSF
Matthew Mingay, Bioinformatics Data Scientist at Joint Genome Institute
Andrew Sharo PhD Graduate Student at UC Berkeley
Said Munoz Montero, Bioinformatician at INMEGEN
Alivia Blount, Machine Learning Engineer at Marcia Data Automation
Yuan Fang, Software engineer at Google
Héctor Manuel Sánchez, Postdoctoral Scholar at University of California, Berkeley
LOGISTICS
FORMAT
This is a weekend hackathon style event, and it will not run overnight. If you are traveling from outside of the Bay Area and need a place to stay please join #bay-area-housing in slack to coordinate potential housing with other participants.
TRANSPORTATION & PARKING
BART Transit: 1.0 mile walk from 16th and Mission Station.
Ride-Share: Please join #transportation in our slack channel to coordinate ride sharing with other participants.
Parking: NOT RECOMMENDED. Street parking is available but is restrictive. If you drive, please do not leave any valuables visible in your car.
FOOD & DRINKS
All meals and drinks will be provided for the weekend. The menu will be posted here when known.
ACKNOWLEDGEMENTS
Thank you to the following people who were provided critical support for this patient case.
Laura D’Angelo, Head of Investor Relations at Invitae: Laura initiated and managed every aspect of our relationship with Invitae.
Luke Hikey, Senior Director, Strategic Marketing, Pac Bio: Luke provided the consumables for the patients Long Read Sequencing on the Pac Bio Sequel machine.
Delara Chizari, PhD Candidate at Harvard University, Co-Founder & CEO at Psykia Institute: Delara and Cosmo introduced us to John! (patient).
Clinton (Cosmo) Mielke, PhD, Data Scientist, UCSF Memory and Aging Center, Founder, Infinome: Delara and Cosmo introduced us to John! (patient).
Lily Vittayarukskul, SVAI team member 2018-2019: Lily was involved from the first day we met John and helped start this case on the SVAI team.